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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
Hi-C
Assay category
8
3D chromatin structure
Date released
3
March, 2020
3
October, 2019
1
August, 2021
1
November, 2019
Available data
1301
bam
1203
bigWig
812
fastq
747
bed narrowPeak
481
bigBed narrowPeak
420
tsv
109
bed broadPeak
109
bigBed broadPeak
76
tagAlign
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
bedpe bed3+
8
hic
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
2
csv
2
ibed
1
vcf
Organism
8
Homo sapiens
Biosample type
tissue
4
in vitro differentiated cells
2
cell line
2
primary cell
Organ
3
epithelium
2
blood vessel
2
vasculature
2
vein
1
liver
1
pancreas
Project
8
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
8
hg19
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3+
biosample_type!
tissue
BIOSAMPLE
ASSAY
8 results
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Clear Filters
Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
primary cell
endothelial cell of umbilical vein
2
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