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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
8
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
Available data
3021
bam
2818
bigWig
1596
bed narrowPeak
1428
tsv
1183
fastq
959
bigBed narrowPeak
308
tagAlign
305
bed broadPeak
268
bigBed broadPeak
bed bed3+
161
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
10
tissue
4
in vitro differentiated cells
2
cell line
Organ
4
pancreas
3
blood vessel
3
epithelium
3
heart
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
16
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
16
hg19
Lab
13
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
vasculature
BIOSAMPLE
ASSAY
16 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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