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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
19
RRBS
17
WGBS
Assay category
36
DNA methylation
19
3D chromatin structure
Date released
23
July, 2019
10
March, 2020
7
November, 2018
6
August, 2017
4
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
Available data
3206
bam
2933
bigWig
1689
bed narrowPeak
1496
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
55
Homo sapiens
Biosample type
36
tissue
12
primary cell
4
in vitro differentiated cells
3
cell line
Organ
11
heart
10
pancreas
9
epithelium
6
musculature of body
5
kidney
5
liver
5
vasculature
4
blood vessel
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
55
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
38
hg19
17
GRCh38
Lab
52
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
55 results
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Hi-C
RRBS
WGBS
tissue
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
2
1
adipose tissue
2
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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