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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ATAC-seq
3
Hi-C
Assay category
3
3D chromatin structure
3
DNA accessibility
Date released
3
February, 2023
2
August, 2021
1
March, 2019
Available data
150
bed narrowPeak
80
bigWig
66
txt
64
xls
26
fastq
25
bam
10
tsv
4
bed bed3+
3
bed bedgraph
3
hic
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
tissue
1
cell line
Organ
1
kidney
1
liver
1
pancreas
Project
6
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
6
hg19
Lab
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
6 results
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ATAC-seq
Hi-C
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
islet of Langerhans
1
kidney
1
cell line
HepG2
1
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