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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
79
ChIP-seq
Assay category
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
13
August, 2017
2
October, 2019
Available data
2973
bam
2724
bigWig
1496
tsv
1472
bed narrowPeak
1153
fastq
833
bigBed narrowPeak
314
tagAlign
155
txt
116
bed broadPeak
79
bigBed broadPeak
67
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
79
Homo sapiens
Biosample type
58
cell line
21
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
79
AMP
Genome assembly (visualization)
79
hg19
62
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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