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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
888
total RNA-seq
380
ChIP-seq
157
DNase-seq
119
ATAC-seq
16
small RNA-seq
10
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
910
Transcription
380
DNA binding
281
DNA accessibility
10
3D chromatin structure
9
DNA methylation
Target of assay
289
histone modification
288
histone
159
broad histone mark
129
narrow histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
17
November, 2018
16
March, 2020
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1487
bam
1485
bigWig
910
tsv
624
bed narrowPeak
446
bigBed narrowPeak
294
fastq
192
bed broadPeak
185
bed bed3+
156
bigBed broadPeak
65
tagAlign
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
8
bedpe bed3+
5
bed bed3
1
bedpe
1
txt
Organism
1584
Homo sapiens
Biosample type
1590
tissue
506
cell line
419
primary cell
289
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
411
pancreas
262
liver
105
heart
90
kidney
70
bone element
65
brain
61
musculature of body
49
blood vessel
49
vasculature
44
limb
30
eye
18
ureter
14
spleen
12
epithelium
12
skeleton
6
artery
1
pericardium
Project
1590
AMP
2
T1D
Genome assembly (visualization)
1696
GRCh38
1590
hg19
Lab
1547
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
1590 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
29
1
42
2
1
6
1
liver
146
78
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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