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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
994
total RNA-seq
710
ChIP-seq
174
DNase-seq
165
ATAC-seq
123
single cell RNA-seq
87
RNA microarray
27
WGBS
20
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1133
Transcription
710
DNA binding
351
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
458
histone modification
457
histone
264
broad histone mark
193
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1719
bam
1610
bigWig
1064
tsv
768
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
2353
Homo sapiens
Biosample type
2361
tissue
620
cell line
513
primary cell
370
in vitro differentiated cells
8
stem cell
Organ
544
connective tissue
486
adipose tissue
472
pancreas
355
liver
269
heart
248
kidney
178
brain
150
bone element
82
musculature of body
72
blood vessel
72
vasculature
53
limb
25
spleen
18
ureter
12
artery
8
skeleton
4
eye
2
intestine
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2361
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1661
GRCh38
1557
hg19
Lab
2102
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
February, 2023
BIOSAMPLE
ASSAY
2361 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
1
islet of Langerhans
271
48
1
44
6
3
1
1
1
4
liver
166
140
2
20
1
3
1
1
1
1
kidney
49
23
13
75
17
1
1
6
1
bone element
84
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