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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ATAC-seq
12
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
1
snATAC-seq
Assay category
93
DNA accessibility
13
Transcription
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
65
bed narrowPeak
16
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
3
bigWig
Organism
106
Homo sapiens
Biosample type
78
tissue
16
in vitro differentiated cells
12
primary cell
1
cell line
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
15
epithelium
14
connective tissue
8
bone element
8
skeleton
2
pancreas
1
adipose tissue
1
brain
Project
107
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
45
hg19
35
GRCh38
Lab
104
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
snATAC-seq
tissue
coronary artery
35
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
1
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