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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
16
total RNA-seq
11
ATAC-seq
3
single cell RNA-seq
Assay category
22
DNA binding
19
Transcription
11
DNA accessibility
Target of assay
14
histone
14
histone modification
8
control
7
broad histone mark
7
narrow histone mark
Date released
670
February, 2021
395
August, 2017
385
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
37
bam
37
fastq
29
bigWig
15
tsv
14
bed narrowPeak
Organism
52
Homo sapiens
Biosample type
37
in vitro differentiated cells
15
tissue
Organ
14
kidney
13
embryo
1
adipose tissue
1
connective tissue
Project
52
AMP
Genome assembly (visualization)
41
GRCh38
30
hg19
Lab
38
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
pancreatic endoderm
9
4
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
primitive gut cell
3
2
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tissue
kidney
11
3
adipose tissue
1
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