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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
7
WGBS
5
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
95
DNA binding
7
DNA methylation
6
Transcription
1
DNA accessibility
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
668
February, 2021
406
November, 2017
378
August, 2017
314
August, 2021
306
October, 2019
296
May, 2020
244
May, 2021
168
July, 2018
120
May, 2019
104
July, 2019
102
February, 2023
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
65
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
118
fastq
117
bam
106
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
1
csv
Organism
109
Homo sapiens
Biosample type
84
cell line
24
tissue
1
primary cell
Organ
55
liver
33
blood
33
bodily fluid
15
spleen
5
pancreas
Project
109
AMP
Genome assembly (visualization)
96
GRCh38
88
hg19
Lab
109
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ChIP-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
5
GM12878
33
tissue
spleen
13
2
liver
4
pancreas
2
1
body of pancreas
2
primary cell
pancreatic cell
1
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