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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
52
total RNA-seq
38
ChIP-seq
2
single cell RNA-seq
1
snATAC-seq
Assay category
58
DNA accessibility
54
Transcription
38
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
6
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
108
fastq
107
bam
97
bigWig
89
bed narrowPeak
26
tsv
19
bigBed narrowPeak
7
txt
3
bed bed3+
1
csv
Organism
150
Homo sapiens
Biosample type
78
primary cell
72
tissue
Organ
107
pancreas
66
epithelium
40
liver
2
musculature of body
Project
150
AMP
134
HPAP
Genome assembly (visualization)
118
hg19
79
GRCh38
Lab
86
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
primary cell
pancreatic ductal cell
4
4
13
pancreatic beta cell
6
10
pancreatic alpha cell
5
10
pancreatic acinar cell
4
2
8
pancreatic endocrine cell
11
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tissue
liver
20
20
islet of Langerhans
18
6
6
skeletal muscle tissue
1
1
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