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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
19
ATAC-seq
13
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
Hi-C
Assay category
36
Transcription
19
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
2
August, 2021
2
March, 2020
Available data
50
bam
49
bigWig
37
tsv
12
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
77
Homo sapiens
Biosample type
72
cell line
5
primary cell
Organ
87
epithelium
84
bone element
77
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
77
AMP
4
T1D
Genome assembly (visualization)
51
hg19
48
GRCh38
Lab
71
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
77
inconsistent ontology term
1
audit script error
organ_slims!
gonad
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Capture-C
Hi-C
cell line
EndoC_BH1
31
19
13
6
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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