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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1731
ChIP-seq
1276
total RNA-seq
396
ATAC-seq
205
single cell RNA-seq
131
DNase-seq
85
RNA microarray
38
pCHi-C
29
Hi-C
28
WGBS
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
STARR-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
28
DNA methylation
Date released
12
July, 2019
9
August, 2017
7
November, 2018
3
August, 2021
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
Organism
31
Homo sapiens
Biosample type
27
tissue
4
cell line
Organ
8
heart
7
liver
6
adipose tissue
6
connective tissue
4
pancreas
2
blood vessel
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
31
AMP
Genome assembly (visualization)
17
GRCh38
Lab
28
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
31 results
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WGBS
STARR-seq
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
cell line
HepG2
1
2
Synthesized DNA
1
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