Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
43
ChIP-seq
25
total RNA-seq
12
ATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
Transcription
43
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
662
February, 2021
296
May, 2020
284
October, 2019
246
May, 2021
189
August, 2021
137
June, 2019
124
August, 2017
118
July, 2018
115
May, 2019
106
February, 2023
97
July, 2019
82
November, 2017
61
November, 2019
57
April, 2019
55
March, 2020
42
May, 2022
40
May, 2024
25
February, 2020
16
November, 2020
16
October, 2018
7
December, 2019
6
October, 2017
5
April, 2018
4
March, 2019
3
January, 2018
1
August, 2022
1
May, 2023
1
October, 2022
Available data
123
tsv
49
bam
47
bigWig
42
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
188
Homo sapiens
Biosample type
101
tissue
42
cell line
42
in vitro differentiated cells
4
primary cell
Organ
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
189
AMP
Genome assembly (visualization)
59
hg19
41
GRCh38
Lab
151
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
files.file_type!
fastq
BIOSAMPLE
ASSAY
189 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 10 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
Download