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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
30
DNase-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
31
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
17
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
November, 2018
Available data
239
bam
218
bigWig
201
bed narrowPeak
125
bigBed narrowPeak
118
tagAlign
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
259
tissue
21
primary cell
Organ
715
liver
661
pancreas
657
connective tissue
484
adipose tissue
346
heart
314
epithelium
280
brain
232
kidney
190
vasculature
184
blood vessel
146
bone element
114
limb
96
artery
95
musculature of body
45
blood
45
bodily fluid
42
nerve
37
embryo
33
eye
22
vein
18
ureter
15
spleen
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
213
GRCh38
161
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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