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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
35
DNA accessibility
12
Transcription
Target of assay
3
control
Date released
30
June, 2019
13
July, 2019
2
November, 2018
1
October, 2017
1
October, 2019
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
47
Homo sapiens
Biosample type
39
tissue
8
primary cell
Organ
491
connective tissue
489
pancreas
405
adipose tissue
186
epithelium
171
liver
118
heart
92
kidney
83
vasculature
81
blood vessel
68
artery
66
bone element
49
limb
47
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
3
vein
1
pericardium
Project
47
AMP
Genome assembly (visualization)
46
GRCh38
35
hg19
Lab
47
AMP-T2D consortium
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
47 results
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DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
14
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 12 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 2 more…
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