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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
18
July, 2019
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
14
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
56
Homo sapiens
Biosample type
44
tissue
12
primary cell
Organ
545
pancreas
528
connective tissue
416
adipose tissue
256
heart
255
kidney
241
epithelium
238
liver
158
bone element
131
vasculature
128
blood vessel
105
artery
56
brain
55
eye
55
musculature of body
53
limb
18
ureter
16
skeleton
15
embryo
7
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
56
AMP-T2D consortium
assay_title!
ChIP-seq
month_released!
February, 2020
BIOSAMPLE
ASSAY
56 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
1
Ammon's horn
1
1
diencephalon
1
1
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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