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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
48
DNA binding
23
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
17
July, 2019
11
February, 2020
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
241
bam
220
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
82
Homo sapiens
Biosample type
72
tissue
10
primary cell
Organ
600
connective tissue
485
pancreas
478
adipose tissue
350
liver
200
heart
152
epithelium
113
kidney
103
vasculature
101
blood vessel
82
brain
67
artery
66
bone element
35
musculature of body
30
limb
28
eye
19
embryo
16
nerve
11
spleen
9
vein
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
82
AMP
Genome assembly (visualization)
23
hg19
16
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 24 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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