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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
34
DNase-seq
22
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
167
DNA binding
40
DNA accessibility
29
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
211
histone
211
histone modification
125
narrow histone mark
broad histone mark
42
control
3
RNA binding protein
3
transcription factor
Date released
109
October, 2019
49
November, 2017
30
June, 2019
18
July, 2019
13
February, 2020
13
May, 2019
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
208
bam
177
bigWig
153
bed narrowPeak
79
bigBed narrowPeak
73
tagAlign
45
bed broadPeak
40
bigBed broadPeak
37
bed bed3+
31
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
243
Homo sapiens
Biosample type
222
tissue
21
primary cell
Organ
749
liver
682
pancreas
639
connective tissue
471
adipose tissue
336
heart
324
epithelium
292
kidney
216
brain
191
vasculature
185
blood vessel
158
bone element
127
artery
88
limb
76
musculature of body
61
blood
61
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
171
GRCh38
154
hg19
Lab
243
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
19
2
5
1
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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