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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
73
ChIP-seq
7
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
406
Transcription
73
DNA binding
11
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
32
October, 2019
12
July, 2019
5
October, 2018
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
456
bigWig
454
bam
406
tsv
40
bed narrowPeak
36
bigBed narrowPeak
25
fastq
8
bed bed3+
7
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
498
Homo sapiens
Biosample type
496
tissue
2
primary cell
1
in vitro differentiated cells
Organ
707
pancreas
683
liver
648
connective tissue
467
adipose tissue
373
heart
338
epithelium
295
kidney
255
brain
214
vasculature
209
blood vessel
158
bone element
132
artery
105
limb
90
musculature of body
60
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
499
AMP
Genome assembly (visualization)
457
hg19
455
GRCh38
Lab
499
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
499 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
tibial nerve
5
24
1
2
omental fat pad
5
3
1
2
1
subcutaneous adipose tissue
7
2
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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