Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
61
ChIP-seq
Assay category
190
DNA accessibility
61
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
53
November, 2017
10
August, 2017
9
November, 2018
5
October, 2019
1
November, 2020
Available data
2579
bam
2336
bigWig
1348
tsv
1241
bed narrowPeak
919
fastq
832
bigBed narrowPeak
273
bed broadPeak
251
bigBed broadPeak
241
bed bed3+
176
tagAlign
161
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
251
Homo sapiens
Biosample type
176
tissue
53
cell line
21
primary cell
1
in vitro differentiated cells
Organ
78
kidney
57
liver
36
limb
35
brain
33
musculature of body
30
heart
epithelium
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
251
AMP
Genome assembly (visualization)
236
GRCh38
234
hg19
Lab
251
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
8
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
organ_slims!
epithelium
BIOSAMPLE
ASSAY
251 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
1
8
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download