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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
66
snATAC-seq
60
ATAC-seq
Assay category
282
Transcription
126
DNA accessibility
88
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
85
May, 2021
60
May, 2022
27
February, 2021
16
January, 2021
13
February, 2023
7
August, 2020
3
March, 2020
3
September, 2020
Available data
98
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
60
zippedFastqFolder
37
fastq
Organism
214
Homo sapiens
Biosample type
189
primary cell
23
tissue
2
cell line
Organ
74
pancreas
51
epithelium
8
blood
8
bodily fluid
Project
2479
AMP
117
T1D
97
HPAP
10
LungMap
Genome assembly (visualization)
98
GRCh38
88
hg19
Lab
113
Kyle Gaulton, UCSD
97
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
snATAC-seq
ATAC-seq
primary cell
monocyte
84
Langerhans cell
48
pancreatic alpha cell
29
pancreatic beta cell
16
peripheral blood mononuclear cell
8
+ See 1 more…
tissue
islet of Langerhans
2
6
11
pancreas
4
cell line
EndoC_BH1
2
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