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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
total RNA-seq
88
ChIP-seq
66
snATAC-seq
57
ATAC-seq
47
WGBS
45
single cell RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
226
Transcription
123
DNA accessibility
88
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
September, 2020
45
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
7
March, 2020
3
October, 2022
Available data
193
bigWig
186
bam
134
zippedFastqFolder
128
fastq
104
tsv
88
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
509
Homo sapiens
Biosample type
469
primary cell
31
tissue
9
cell line
Organ
167
pancreas
137
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4252
AMP
265
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
193
GRCh38
189
hg19
Lab
265
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
30
audit script error
9
inconsistent ontology term
month_released!
September, 2020
BIOSAMPLE
ASSAY
509 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
single cell RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
48
45
pancreatic alpha cell
27
27
31
1
pancreatic beta cell
10
15
16
1
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
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