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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 605ChIP-seq
  • 247ATAC-seq
  • 151total RNA-seq
  • 122single cell RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 29Hi-C
  • 21RRBS
  • 11WGBS
  • 10MeRIP-seq
  • 8snATAC-seq
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 605DNA binding
  • 273Transcription
  • 265DNA accessibility
  • 33DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 214August, 2021
  • 162August, 2017
  • 134May, 2020
  • 126November, 2017
  • 107October, 2019
  • 106May, 2021
  • 102February, 2021
  • 71February, 2023
  • 66May, 2022
  • 46March, 2020
  • 29July, 2019
  • 29October, 2018
  • 25February, 2020
  • 24May, 2019
  • 17December, 2017
  • 16April, 2019
  • 10November, 2020
  • 9November, 2018
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 5December, 2018
  • 5December, 2019
  • 4January, 2019
  • 4July, 2018
  • 4November, 2019
  • 4September, 2017
  • 3March, 2019
  • 3May, 2023
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
  • 1September, 2018
Available data
  • 433bam
  • 248fastq
  • 239bigWig
  • 194tsv
  • 185bed narrowPeak
  • 161txt
  • 152tagAlign
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 20bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 19hic
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1358Homo sapiens
Biosample type
  • 823tissue
  • 214primary cell
  • 191cell line
  • 129in vitro differentiated cells
  • 5stem cell
Organ
  • 260liver
  • 141pancreas
  • 127heart
  • 117connective tissue
  • 102kidney
  • 92bone element
  • 88epithelium
  • 69brain
  • 67adipose tissue
  • 55eye
  • 45vasculature
  • 43blood vessel
  • 43musculature of body
  • 26limb
  • 13artery
  • 12nerve
  • 10vein
  • 9spleen
  • 8embryo
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1362AMP
  • 314HPAP
  • 58T1D
  • 47KPMP
  • LungMap
  • 4community
  • 0ITG
Genome assembly (visualization)
  • 3024hg19
  • GRCh38
  • 5hg18
Lab
  • 1092AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 67Katalin Susztak, Upenn
  • 40Karen Mohlke, UNC
  • 37Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 156inconsistent ontology term
  • 12audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
award.project!
  • LungMap
BIOSAMPLE
ASSAY

1362 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snATAC-seq
DNase-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
...and 1 more
tissue
islet of Langerhans463525431411
liver70202011113
bone element84
kidney749171161
subcutaneous abdominal adipose tissue363
primary cell
CD8-positive, alpha-beta T cell3322
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
macrophage11
endothelial cell of umbilical vein721
cell line
HepG21179222
EndoC_BH12181621
GM1287861
Panc17
HEK293T2
in vitro differentiated cells
embryonic stem cell38651
adipocyte19811
neural progenitor cell8
cardiomyocytes (cardiac muscle cell)222
pancreatic endoderm51
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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