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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
88
ChIP-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
88
DNA binding
39
DNA accessibility
9
Transcription
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
19
April, 2020
18
February, 2023
16
January, 2021
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
Organism
157
Homo sapiens
Biosample type
108
primary cell
43
tissue
7
cell line
Organ
25
pancreas
19
lung
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2956
AMP
232
HPAP
139
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
135
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
2
6
11
lung
10
9
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
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