Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
86
ChIP-seq
28
snATAC-seq
16
pCHi-C
11
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
108
Transcription
86
DNA binding
39
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
41
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
4
March, 2020
Available data
178
bam
178
bigWig
92
tsv
86
bed narrowPeak
84
tagAlign
Organism
253
Homo sapiens
Biosample type
199
primary cell
50
tissue
5
cell line
Organ
30
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3908
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
178
GRCh38
178
hg19
Lab
231
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
7
2
6
11
lung
10
9
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download