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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
85
single cell RNA-seq
66
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
184
Transcription
126
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
99
February, 2023
59
September, 2020
45
February, 2021
17
May, 2021
16
January, 2021
7
August, 2020
2
March, 2020
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
Organism
379
Homo sapiens
Biosample type
345
primary cell
29
tissue
5
cell line
Organ
177
pancreas
149
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
1268
AMP
321
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
196
GRCh38
hg19
Lab
321
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
379 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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