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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
total RNA-seq
86
ChIP-seq
16
pCHi-C
16
snATAC-seq
Assay category
94
Transcription
86
DNA binding
16
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
41
May, 2020
February, 2023
16
January, 2021
4
March, 2020
Available data
178
bam
178
bigWig
92
tsv
86
bed narrowPeak
84
tagAlign
Organism
212
Homo sapiens
Biosample type
199
primary cell
13
tissue
Organ
12
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3853
AMP
248
HPAP
212
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
178
GRCh38
178
hg19
Lab
208
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
212 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
2
2
4
pancreas
4
thymus
1
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