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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
84
ChIP-seq
18
snATAC-seq
16
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
97
Transcription
84
DNA binding
29
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
41
May, 2020
23
February, 2023
16
January, 2021
March, 2020
Available data
176
bam
176
bigWig
92
tsv
84
bed narrowPeak
84
tagAlign
Organism
231
Homo sapiens
Biosample type
199
primary cell
27
tissue
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3905
AMP
324
HPAP
231
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
176
GRCh38
176
hg19
Lab
231
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
231 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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