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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
42
ChIP-seq
18
snATAC-seq
15
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
99
Transcription
42
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
106
May, 2021
41
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
134
bam
134
bigWig
92
tsv
42
bed narrowPeak
40
tagAlign
Organism
190
Homo sapiens
Biosample type
154
primary cell
31
tissue
5
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
3505
AMP
324
HPAP
190
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
134
GRCh38
134
hg19
Lab
186
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
broad histone mark
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 28 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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