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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
40
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
92
Transcription
40
DNA binding
8
DNA accessibility
Target of assay
84
histone
84
histone modification
broad histone mark
40
narrow histone mark
Date released
107
May, 2021
41
May, 2020
8
January, 2021
5
February, 2023
Available data
132
bam
132
bigWig
92
tsv
40
bed narrowPeak
40
tagAlign
Organism
161
Homo sapiens
Biosample type
155
primary cell
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2894
AMP
172
HPAP
161
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
132
GRCh38
132
hg19
Lab
161
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
broad histone mark
organ_slims!
pancreas
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
cell line
EndoC_BH1
3
2
tissue
thymus
1
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