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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
84
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
Assay category
101
Transcription
84
DNA binding
29
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
45
May, 2020
18
February, 2023
16
January, 2021
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
Organism
231
Homo sapiens
Biosample type
204
primary cell
27
tissue
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
324
HPAP
308
AMP
231
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
231
Kyle Gaulton, UCSD
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
lab.title!
AMP-T2D consortium
biosample_type!
cell line
BIOSAMPLE
ASSAY
231 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
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