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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
58
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
86
DNA binding
58
Transcription
29
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
137
bam
137
bigWig
86
bed narrowPeak
84
tagAlign
51
tsv
Organism
195
Homo sapiens
Biosample type
159
primary cell
31
tissue
5
cell line
Organ
34
pancreas
8
blood
8
bodily fluid
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3588
AMP
195
T1D
172
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
137
GRCh38
137
hg19
Lab
191
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
51
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
2
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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