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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
86
ChIP-seq
17
pCHi-C
11
ATAC-seq
10
snATAC-seq
Assay category
103
Transcription
86
DNA binding
21
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
45
May, 2020
18
February, 2023
8
January, 2021
4
March, 2020
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
84
tagAlign
Organism
227
Homo sapiens
Biosample type
196
primary cell
31
tissue
cell line
Organ
30
pancreas
8
blood
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3601
AMP
324
HPAP
227
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
182
GRCh38
182
hg19
Lab
223
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
bodily fluid
biosample_type!
cell line
BIOSAMPLE
ASSAY
227 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
7
2
11
6
pancreas
4
thymus
1
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