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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
18
snATAC-seq
16
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
88
DNA binding
29
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
101
May, 2021
18
February, 2023
16
January, 2021
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
Organism
138
Homo sapiens
Biosample type
108
primary cell
23
tissue
7
cell line
Organ
25
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
2675
AMP
147
HPAP
138
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
134
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
thymus
assay_slims!
Transcription
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
2
6
11
pancreas
4
cell line
EndoC_BH1
2
3
2
See all biosamples
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