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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
85
single cell RNA-seq
66
snATAC-seq
50
ATAC-seq
47
WGBS
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
184
Transcription
116
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
99
February, 2023
56
September, 2020
45
February, 2021
16
January, 2021
16
May, 2021
3
October, 2022
2
March, 2020
Available data
159
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
371
Homo sapiens
Biosample type
338
primary cell
28
tissue
5
cell line
Organ
170
pancreas
142
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
thymus
Project
1361
AMP
314
HPAP
57
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
GRCh38
189
hg19
Lab
314
Klaus Kaestner, Upenn
55
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
30
audit script error
1
inconsistent ontology term
organ_slims!
thymus
assembly!
GRCh38
BIOSAMPLE
ASSAY
371 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
22
31
1
pancreatic beta cell
11
13
16
1
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
cell line
EndoC_BH1
3
2
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