Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
44
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
44
DNA binding
29
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
61
May, 2021
18
February, 2023
16
January, 2021
Available data
44
bam
44
bed narrowPeak
44
bigWig
44
tagAlign
Organism
95
Homo sapiens
Biosample type
68
primary cell
22
tissue
5
cell line
Organ
21
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2461
AMP
232
HPAP
95
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
95
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
95 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
44
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download