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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
14
November, 2019
3
February, 2023
1
March, 2020
1
May, 2021
Available data
15
bam
13
bed narrowPeak
13
bigWig
1
bedpe bed3+
1
hic
Organism
18
Homo sapiens
Biosample type
19
cell line
Organ
17
epithelium
17
pancreas
Project
15
AMP
4
T1D
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
17
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
15
2
1
1
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