Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
19
ATAC-seq
13
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
31
Transcription
19
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
16
November, 2019
6
November, 2020
2
August, 2021
2
March, 2020
1
February, 2023
Available data
45
bam
44
bigWig
32
tsv
12
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
72
Homo sapiens
Biosample type
73
cell line
Organ
73
epithelium
73
pancreas
Project
73
AMP
9
T1D
Genome assembly (visualization)
46
hg19
43
GRCh38
Lab
67
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
72
inconsistent ontology term
BIOSAMPLE
ASSAY
73 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
31
19
13
6
2
1
1
Download