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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
17
ATAC-seq
14
ChIP-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
31
Transcription
17
DNA accessibility
14
DNA binding
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
control
5
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
February, 2023
6
November, 2020
March, 2020
2
August, 2021
Available data
46
bam
43
bigWig
31
tsv
13
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
76
Homo sapiens
Biosample type
77
cell line
Organ
72
epithelium
72
pancreas
Project
71
AMP
6
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
66
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
71
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
31
17
14
6
3
2
2
1
1
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