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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
13
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
33
Transcription
19
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
14
November, 2019
6
February, 2023
5
March, 2020
3
November, 2020
2
August, 2021
Available data
48
bigWig
47
bam
34
tsv
14
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
76
Homo sapiens
Biosample type
77
cell line
Organ
72
epithelium
72
pancreas
Project
68
AMP
9
T1D
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
69
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
71
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
33
19
13
3
3
2
2
1
1
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