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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
14
total RNA-seq
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
360
DNA binding
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
45
November, 2018
15
August, 2021
Available data
345
fastq
344
bam
308
bigWig
291
bed narrowPeak
280
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
3
tar
1
tagAlign
Organism
360
Homo sapiens
Biosample type
360
cell line
Organ
360
liver
Project
360
AMP
Genome assembly (visualization)
304
hg19
248
GRCh38
Lab
345
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_title!
Hi-C
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
cell line
HepG2
360
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