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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
378
DNA binding
1
DNA accessibility
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
45
November, 2018
18
August, 2021
1
February, 2021
Available data
360
bam
360
fastq
326
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
1
bed bed3
Organism
379
Homo sapiens
Biosample type
379
cell line
Organ
379
liver
Project
379
AMP
Genome assembly (visualization)
323
hg19
262
GRCh38
Lab
361
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
379 results
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ChIP-seq
ATAC-seq
cell line
HepG2
378
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