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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
378
DNA binding
1
DNA methylation
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
18
August, 2021
Available data
361
fastq
360
bam
327
bigWig
307
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
1
bed bedMethyl
1
bigBed bedMethyl
Organism
379
Homo sapiens
Biosample type
379
cell line
Organ
379
liver
Project
379
AMP
Genome assembly (visualization)
322
hg19
262
GRCh38
Lab
361
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
379 results
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ChIP-seq
WGBS
cell line
HepG2
378
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