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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
376
DNA binding
1
DNA methylation
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
other context
2
other post-translational modification
Date released
313
November, 2017
46
November, 2018
18
August, 2021
Available data
359
fastq
358
bam
325
bigWig
305
bed narrowPeak
291
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
12
tagAlign
3
tar
1
bed bedMethyl
1
bigBed bedMethyl
Organism
377
Homo sapiens
Biosample type
377
cell line
Organ
377
liver
Project
377
AMP
Genome assembly (visualization)
320
hg19
260
GRCh38
Lab
359
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
other context
BIOSAMPLE
ASSAY
377 results
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ChIP-seq
WGBS
cell line
HepG2
376
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