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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
366
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
366
DNA binding
Target of assay
297
transcription factor
82
recombinant protein
59
control
54
RNA binding protein
20
chromatin remodeller
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
45
November, 2018
18
August, 2021
Available data
360
fastq
359
bam
326
bigWig
307
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
tagAlign
3
tar
Organism
366
Homo sapiens
Biosample type
366
cell line
Organ
366
liver
Project
366
AMP
Genome assembly (visualization)
310
hg19
252
GRCh38
Lab
348
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
cell line
HepG2
366
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