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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
375
DNA binding
Target of assay
294
transcription factor
82
recombinant protein
60
control
53
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
312
November, 2017
45
November, 2018
18
August, 2021
Available data
360
fastq
359
bam
326
bigWig
307
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
tar
Organism
375
Homo sapiens
Biosample type
375
cell line
Organ
375
liver
Project
375
AMP
Genome assembly (visualization)
319
hg19
261
GRCh38
Lab
357
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tar
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
cell line
HepG2
375
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