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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
375
DNA binding
Target of assay
296
transcription factor
82
recombinant protein
59
control
53
RNA binding protein
20
chromatin remodeller
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
312
November, 2017
45
November, 2018
18
August, 2021
Available data
357
fastq
356
bam
323
bigWig
305
bed narrowPeak
291
bigBed narrowPeak
56
bed broadPeak
56
bigBed broadPeak
11
tagAlign
3
tar
Organism
375
Homo sapiens
Biosample type
375
cell line
Organ
375
liver
Project
375
AMP
Genome assembly (visualization)
319
hg19
260
GRCh38
Lab
357
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
13
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.platform.term_name!
Illumina Genome Analyzer II
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
cell line
HepG2
375
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