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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
81
DNA binding
Target of assay
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
74
November, 2017
7
August, 2021
Available data
74
bam
74
fastq
34
bigWig
19
bed narrowPeak
16
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
Organism
81
Homo sapiens
Biosample type
81
cell line
Organ
81
liver
Project
81
AMP
Genome assembly (visualization)
34
hg19
16
GRCh38
Lab
74
AMP-T2D consortium
7
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
cell line
HepG2
81
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