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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
8
ATAC-seq
5
total RNA-seq
1
Capture-C
Assay category
67
DNA binding
8
DNA accessibility
5
Transcription
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
8
February, 2021
2
August, 2021
2
February, 2023
2
October, 2019
Available data
57
bam
54
bigWig
53
fastq
43
bed narrowPeak
14
tagAlign
9
bed bed3+
4
bed bedgraph
4
tsv
2
bigBed narrowPeak
Organism
81
Homo sapiens
Biosample type
81
in vitro differentiated cells
Organ
81
connective tissue
Project
81
AMP
Genome assembly (visualization)
61
hg19
52
GRCh38
Lab
79
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
in vitro differentiated cells
adipocyte
67
8
5
1
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